Fitness data for BPHYT_RS25560 in Burkholderia phytofirmans PsJN

RNA polymerase sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.1)


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group condition fitness t score  
nitrogen source L-Isoleucine (N) -1.9 -1.8 compare
phage 36hr PHYTO11 MOI 1 -1.7 -1.5 compare
phage 36hr PHYTO10 MOI 10 -1.4 -1.2 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.4 -1.1 compare
nitrogen source L-Glutamic (N) -1.4 -1.4 compare
tn7 efficiency Outgrowth after Tn7 transformation -1.4 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 -1.1 compare
carbon source Phenylacetic 5 mM (C) -1.3 -1.5 compare
nitrogen source Ammonium chloride (N) -1.2 -1.3 compare
phage 36hr PHYTO6 MOI 0.1 -1.2 -1.3 compare
phage PHYTO3 MOI 0.1 -1.1 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.1 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 +1.9 compare
phage 36hr PHYTO8 MOI 10 +1.2 +2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +1.3 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.3 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.4 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +1.5 +2.6 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +1.7 +2.3 compare