Fitness data for BPHYT_RS25045 in Burkholderia phytofirmans PsJN

LysR family transcriptional regulator
SEED: Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage 36hr PHYTO10 MOI 10 -1.1 -2.8 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.9 -1.6 compare
phage 36hr PHYTO8 MOI 10 -0.9 -1.4 compare
phage 36hr PHYTO11 MOI 1 -0.9 -1.8 compare
phage 24hr PHYTO9 MOI 0.1 -0.9 -2.0 compare
phage 36hr PHYTO3 MOI 1 -0.8 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.2 compare
nophagecontrol 24hr Phyto Lib only -0.8 -1.4 compare
phage 36hr PHYTO2 MOI 1 -0.8 -2.0 compare
phage 24hr PHYTO MOI 0.1 -0.8 -1.9 compare
nophagecontrol 24hr Phyto Lib Only -0.7 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.7 +1.3 compare
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 +0.7 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.8 +1.9 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.8 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.8 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 +3.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +1.1 +2.6 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.2 +2.7 compare