Fitness data for BPHYT_RS24740 in Burkholderia phytofirmans PsJN

RNA polymerase subunit sigma-24
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.6 -1.4 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.6 -2.1 compare
phage 24hr PHYTO11 MOI 0.1 +0.6 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.6 compare
nitrogen source Carnitine Hydrochloride (N) +0.6 +1.0 compare
phage P. phyto corn MOI 0.1 +0.7 +1.3 compare
temperature LB 37C +0.7 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.7 compare
carbon source adipate (C) +0.7 +2.5 compare
phage P. phyto PHYTO2 MOI 1 +0.7 +2.4 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 +0.7 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +2.2 compare
phage 36hr PHYTO10 MOI 10 +0.8 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +3.7 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +2.6 +3.6 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +2.9 +3.8 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +3.0 +4.7 compare