Fitness data for BPHYT_RS24440 in Burkholderia phytofirmans PsJN

type VI secretion protein
SEED: FIG00977343: hypothetical protein
KEGG: type VI secretion system protein ImpM

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -1.2 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 -2.0 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -1.1 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -2.8 compare
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -0.9 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -1.8 compare
phage 36hr PHYTO4 MOI 1 -0.9 -1.2 compare
phage 24hr PHYTO6 MOI 0.1 -0.8 -1.7 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -2.1 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.7 -1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.7 -1.5 compare
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -0.7 -2.6 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.7 -1.6 compare
carbon source Xylitol (C) +0.7 +2.5 compare
carbon source Suberic (C) +0.8 +1.6 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.9 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +1.1 compare
nitrogen source Carnitine Hydrochloride (N) +1.0 +3.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +1.1 +2.3 compare