Fitness data for BPHYT_RS24000 in Burkholderia phytofirmans PsJN

L-histidine ABC transporter, substrate-binding component (from data)
Original annotation: ABC transporter substrate-binding protein
SEED: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
KEGG: octopine/nopaline transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source L-Histidine (C) -1.2 -5.7 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.0 -2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.7 -2.0 compare
carbon source D-Glucose (C) -0.6 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -1.4 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.6 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.3 compare
phage 24hr PHYTO4 MOI 10 -0.6 -2.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.6 +2.6 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.7 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.7 +2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.7 +2.4 compare
nitrogen source L-Lysine (N) +0.8 +2.8 compare
phage PHYTO3 MOI 0.1 +0.8 +3.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.8 compare
stress Nickel (II) chloride 1 mM +0.9 +3.1 compare