Fitness data for BPHYT_RS21495 in Burkholderia phytofirmans PsJN

ABC transporter
SEED: Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -4.8 -1.0 compare
carbon source Phenylacetic 5 mM (C) -3.6 -0.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.4 -1.0 compare
carbon source Tween 20 (C) -2.4 -1.0 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.3 -1.2 compare
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -2.2 -0.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.2 -1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.1 -0.9 compare
nitrogen source Ammonium chloride (N) -1.9 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.9 -1.0 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.8 -0.9 compare
carbon source Malonic (C) -1.7 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 -0.9 compare
motility inner cut, LB soft agar motility assay -1.4 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +1.3 +1.4 compare
phage 36hr PHYTO10 MOI 10 +1.3 +1.7 compare
lb_dap plate control LB_DAP agar plate, outgrowth in LB +1.4 +1.8 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 +1.5 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.8 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +5.7 +9.5 compare