Fitness data for BPHYT_RS18925 in Burkholderia phytofirmans PsJN

RNA polymerase sigma70
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.4)


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group condition fitness t score  
motility outer cut, LB soft agar motility assay -4.9 -6.2 compare
motility outer cut, LB soft agar motility assay -3.8 -6.2 compare
stress Bacitracin 0.25 mg/ml -3.6 -9.3 compare
motility inner cut, LB soft agar motility assay -3.2 -10.5 compare
motility inner cut, LB soft agar motility assay -2.5 -5.5 compare
motility outer cut, LB soft agar motility assay -2.4 -9.2 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.3 -8.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.1 -7.6 compare
motility inner cut, LB soft agar motility assay -2.1 -5.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.0 -6.1 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -1.6 -7.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 -4.3 compare
stress Bacitracin 0.125 mg/ml -1.5 -7.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.4 -5.3 compare
nitrogen source L-Isoleucine (N) +1.4 +9.3 compare
carbon source Tween 20 (C) +1.6 +9.5 compare
carbon source D-Xylose (C) +1.7 +13.1 compare
carbon source Xylitol (C) +1.8 +10.5 compare
carbon source Gly-Glu (C) +1.8 +10.6 compare
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +2.2 +12.6 compare