Fitness data for BPHYT_RS18505 in Burkholderia phytofirmans PsJN

amino acid dehydrogenase
SEED: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
KEGG: D-amino-acid dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -2.7 -12.1 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.9 -4.8 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.4 -2.0 compare
carbon source D-Alanine (C) -0.3 -2.6 compare
carbon source L-Alanine (C) -0.3 -2.7 compare
phage 24hr PHYTO4 MOI 10 -0.3 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.2 +1.3 compare
motility inner cut, LB soft agar motility assay +0.2 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +1.7 compare
motility inner cut, LB soft agar motility assay +0.2 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.3 compare
phage 24hr PHYTO6 MOI 0.1 +0.3 +1.6 compare
carbon source Disodium Glutarate (C) +0.3 +1.8 compare
r2a control R2A control +0.3 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.4 compare
motility outer cut, LB soft agar motility assay +0.3 +2.1 compare
carbon source adipate (C) +0.9 +5.2 compare