Fitness data for BPHYT_RS16935 in Burkholderia phytofirmans PsJN

D-galactose ABC transporter, substrate-binding component (from data)
Original annotation: arabinose ABC transporter substrate-binding protein
SEED: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
KEGG: L-arabinose transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source D-Galactose (C) -2.1 -8.2 compare
carbon source L-Arabinose (C) -1.5 -3.0 compare
phage P. phyto PHYTO2 MOI 1 -0.4 -1.6 compare
phage 24hr PHYTO3 MOI 10 -0.4 -1.5 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.4 -1.4 compare
phage 24hr PHYTO2 MOI 0.1 -0.4 -1.7 compare
phage 24hr PHYTO6 MOI 1 -0.4 -1.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 +1.7 compare
carbon source D-Glucose 20 mM (C) +0.4 +2.3 compare
carbon source Phenylacetic 5 mM (C) +0.5 +1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.4 compare
carbon source Malonic (C) +0.6 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +2.8 compare