Fitness data for BPHYT_RS15775 in Burkholderia phytofirmans PsJN

peptide ABC transporter permease
SEED: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
KEGG: peptide/nickel transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
nophagecontrol 36hr Phyto Lib only -1.0 -2.0 compare
carbon source D-Glucosamine Hydrochloride (C) -0.9 -2.8 compare
phage P. phyto PHYTO2 MOI 1 -0.8 -1.3 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.7 +2.6 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 +0.7 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.3 compare
supernatant control Vogels_fungal_media 0.1X +0.7 +2.2 compare
phage 36hr PHYTO8 MOI 10 +0.7 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +2.4 compare
phage 36hr PHYTO11 MOI 1 +0.8 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +1.6 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.8 +2.8 compare
carbon source L-Lactate (C) +0.9 +2.3 compare
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 +0.9 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.9 +1.8 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 +0.9 +1.5 compare
motility outer cut, LB soft agar motility assay +1.0 +1.5 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.0 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +1.0 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 +2.0 compare