Fitness data for BPHYT_RS14400 in Burkholderia phytofirmans PsJN

anti-sigma factor
SEED: Sigma factor RpoE negative regulatory protein RseA
KEGG: sigma-E factor negative regulatory protein RseA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.7)


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group condition fitness t score  
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -4.8 -2.2 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -4.8 -2.8 compare
motility inner cut, LB soft agar motility assay -4.6 -3.3 compare
motility outer cut, LB soft agar motility assay -4.5 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -4.3 -4.1 compare
motility inner cut, LB soft agar motility assay -3.9 -3.8 compare
motility outer cut, LB soft agar motility assay -3.7 -2.0 compare
nitrogen source Uridine (N) -3.5 -4.9 compare
motility inner cut, LB soft agar motility assay -3.4 -1.9 compare
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -3.4 -3.6 compare
motility outer cut, LB soft agar motility assay -3.2 -2.4 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -3.1 -4.7 compare
vitamin With vitamins t2 -3.1 -3.5 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.8 -3.5 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.8 -3.2 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.8 -4.4 compare
carbon source Suberic (C) -2.7 -3.4 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.7 -2.2 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.7 -2.1 compare
phage 36hr PHYTO4 MOI 1 +2.7 +6.9 compare