Fitness data for BPHYT_RS13295 in Burkholderia phytofirmans PsJN

amino acid ABC transporter substrate-binding protein
SEED: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
KEGG: polar amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.5 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 -1.4 compare
nitrogen source L-Lysine (N) -0.7 -2.5 compare
carbon source Phenylacetic 5 mM (C) -0.7 -1.5 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.7 +2.3 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.7 +1.1 compare
carbon source adipate (C) +0.7 +1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 +2.5 compare
phage 24hr PHYTO10 MOI 1 +0.7 +2.1 compare
motility outer cut, LB soft agar motility assay +0.7 +2.5 compare
nitrogen source L-Glutamic (N) +0.7 +1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.8 +2.2 compare
nitrogen source L-Alanine (N) +0.8 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.9 +2.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +1.0 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.1 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +2.3 +1.7 compare