Fitness data for BPHYT_RS11220 in Burkholderia phytofirmans PsJN

LacI family transcriptional regulator
SEED: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
KEGG: ribose transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
supernatant control Vogels_fungal_media 0.1X -0.9 -2.6 compare
phage 24hr PHYTO10 MOI 10 -0.9 -1.8 compare
phage 36hr PHYTO4 MOI 1 -0.8 -1.6 compare
motility outer cut, LB soft agar motility assay -0.8 -2.4 compare
motility outer cut, LB soft agar motility assay -0.8 -2.5 compare
carbon source 2-Deoxy-D-Ribose (C) -0.7 -1.6 compare
motility inner cut, LB soft agar motility assay -0.7 -2.1 compare
stress Nickel (II) chloride 1 mM -0.7 -2.5 compare
stress Paraquat dichloride 0.032 mg/ml +0.7 +3.6 compare
stress Bacitracin 0.25 mg/ml +0.7 +1.4 compare
stress Paraquat dichloride 0.064 mg/ml +0.7 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.3 compare
lb LB +0.8 +3.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.8 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +3.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +2.8 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.6 +2.3 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.8 +2.6 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +2.0 +2.5 compare