Fitness data for BPHYT_RS11040 in Burkholderia phytofirmans PsJN

GntR family transcriptional regulator
SEED: Predicted regulator PutR for proline utilization, GntR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.4)


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group condition fitness t score  
supernatant control Vogels_fungal_media; pH 5.5 -5.0 -1.1 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -4.7 -1.0 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -4.0 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.4 -1.0 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.3 -1.2 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.7 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.6 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.5 -1.0 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.5 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5 -0.8 compare
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 +1.4 +1.6 compare
carbon source 2-Deoxy-D-Ribose (C) +1.5 +2.1 compare
phage 24hr PHYTO4 MOI 10 +1.6 +2.4 compare
nitrogen source L-Lysine (N) +1.7 +1.6 compare
carbon source Suberic (C) +1.7 +1.9 compare
carbon source 2-Deoxy-D-Ribose (C) +1.7 +2.7 compare
carbon source 2-Deoxy-D-Ribose (C) +1.7 +2.6 compare
carbon source Suberic (C) +2.2 +2.9 compare
carbon source adipate (C) +3.2 +4.6 compare