Fitness data for BPHYT_RS09215 in Burkholderia phytofirmans PsJN

ATP-dependent DNA ligase
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
phage 24hr PHYTO3 MOI 10 -0.4 -2.4 compare
phage 24hr PHYTO4 MOI 10 -0.3 -1.4 compare
phage 24hr PHYTO3 MOI 0.1 -0.2 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.2 -1.5 compare
carbon source D-Glucose 20 mM (C) -0.2 -1.4 compare
phage 24hr PHYTO6 MOI 1 +0.2 +1.2 compare
carbon source 2-Deoxy-D-Ribose (C) +0.2 +1.5 compare
nitrogen source NAG (N) +0.2 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +1.3 compare
pH LB, pH5 +0.2 +2.0 compare
nitrogen source Uridine (N) +0.2 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.4 compare
motility outer cut, LB soft agar motility assay +0.3 +1.5 compare
nitrogen source L-Asparagine (N) +0.3 +1.8 compare
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.1 compare