Fitness data for BPHYT_RS09210 in Burkholderia phytofirmans PsJN

DNA repair protein
SEED: Ku domain protein
KEGG: DNA end-binding protein Ku

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source L-Isoleucine (N) -0.7 -2.5 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.6 -2.8 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.4 compare
nitrogen source D-Alanine (N) -0.5 -2.5 compare
nitrogen source L-Lysine (N) -0.5 -1.1 compare
nitrogen source L-Phenylalanine (N) -0.5 -2.2 compare
nitrogen source Ammonium chloride (N) -0.5 -1.7 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.4 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.4 compare
phage 24hr PHYTO9 MOI 10 +0.4 +1.8 compare
phage 24hr PHYTO10 MOI 1 +0.4 +2.0 compare
phage 24hr PHYTO10 MOI 10 +0.5 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.8 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.6 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +2.2 compare