Fitness data for BPHYT_RS08845 in Burkholderia phytofirmans PsJN

RNA polymerase sigma factor
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
phage P. phyto PHYTO2 MOI 1 -1.2 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.8 -1.7 compare
phage 24hr PHYTO7 MOI 10 -0.8 -1.6 compare
nitrogen source L-Lysine (N) -0.8 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.9 compare
motility outer cut, LB soft agar motility assay -0.6 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.3 compare
carbon source 2-Deoxy-D-Ribose (C) +0.6 +1.7 compare
phage P. phyto PHYTO2 MOI 1 +0.6 +1.9 compare
phage 24hr PHYTO2 MOI 1 +0.6 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.0 compare
phage 36hr PHYTO8 MOI 10 +0.6 +2.2 compare
carbon source propionate (C) +0.7 +1.7 compare
phage 36hr PHYTO6 MOI 1 +0.7 +2.2 compare
carbon source Sebacic (C) +0.7 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +2.4 compare
phage 24hr PHYTO9 MOI 10 +0.9 +2.3 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.0 +1.7 compare