Fitness data for BPHYT_RS08235 in Burkholderia phytofirmans PsJN

nucleoprotein, Hfg, host factor I
SEED: RNA-binding protein Hfq / domain of unknown function
KEGG: host factor-I protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.2)


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group condition fitness t score  
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -4.3 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.0 -1.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -3.9 -0.8 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -3.9 -0.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -3.8 -1.0 compare
carbon source D-Galacturonic Acid (C) -3.7 -1.5 compare
tn7 efficiency Outgrowth after Tn7 transformation -3.2 -1.7 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -3.0 -1.0 compare
carbon source Tween 20 (C) -2.9 -1.2 compare
stress Benzethonium chloride 0.0016 mM -2.7 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.7 -0.6 compare
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -2.6 -0.9 compare
phage 24hr PHYTO3 MOI 10 -2.4 -0.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.4 -0.7 compare
phage 24hr PHYTO3 MOI 10 -2.3 -0.5 compare
phage 36hr PHYTO7 MOI 0.1 -2.3 -0.7 compare
phage 36hr PHYTO3 MOI 1 -2.3 -0.6 compare
nophagecontrol 36hr Phyto Lib Only -2.2 -0.7 compare
nophagecontrol 24hr Phyto Lib Only -2.2 -0.7 compare
vitamin With vitamins t2 +2.7 +1.8 compare