Fitness data for BPHYT_RS03990 in Burkholderia phytofirmans PsJN

sugar ABC transporter substrate-binding protein
SEED: Polysaccharide export lipoprotein Wza
KEGG: polysaccharide export outer membrane protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -1.3 -3.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -1.7 compare
lb_dap plate control LB_DAP agar plate, outgrowth in LB -0.6 -2.1 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.5 -1.2 compare
phage 36hr PHYTO8 MOI 10 -0.5 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.6 +1.5 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.6 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.2 compare
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.6 +2.0 compare
phage 36hr PHYTO2 MOI 1 +0.7 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.8 +3.1 compare
carbon source L-Fucose (C) +0.9 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.0 compare
nitrogen source L-Isoleucine (N) +1.0 +3.5 compare
carbon source D-Xylose (C) +1.0 +4.3 compare
carbon source Xylitol (C) +1.1 +4.7 compare
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +1.1 +4.9 compare
carbon source Tween 20 (C) +1.1 +4.1 compare