Fitness data for BPHYT_RS01825 in Burkholderia phytofirmans PsJN

sugar ABC transporter substrate-binding protein
SEED: Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
KEGG: ribose transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
r2a control R2A control -1.7 -2.7 compare
carbon source Phenylacetic 5 mM (C) -1.4 -2.0 compare
phage 36hr PHYTO7 MOI 1 -1.3 -2.4 compare
phage 24hr PHYTO2 MOI 1 -0.8 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -1.5 compare
phage 36hr PHYTO11 MOI 1 -0.7 -1.0 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.7 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -1.3 compare
motility outer cut, LB soft agar motility assay +0.7 +0.9 compare
phage 36hr PHYTO2 MOI 1 +0.7 +1.7 compare
motility outer cut, LB soft agar motility assay +0.7 +1.5 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.7 +1.2 compare
phage 24hr PHYTO9 MOI 10 +0.7 +1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.8 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +1.3 compare
nitrogen source L-Serine (N) +0.8 +1.6 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.9 +2.3 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.9 +0.9 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.9 +2.5 compare
nitrogen source L-Lysine (N) +1.1 +2.6 compare