Fitness data for ABZR87_RS21355 in Ralstonia sp. UNC404CL21Col

ATP-dependent DNA ligase
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) LigC
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 -2.2 compare
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -1.6 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.7 compare
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 -1.7 compare
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.3 -2.1 compare
rhizosphere rhizosphere sample 4; outgrowth in LB -0.3 -1.7 compare
carbon source 4-Hydroxybenzoic Acid (C) -0.2 -1.0 compare
carbon source Octanoic (C) -0.2 -0.9 compare
carbon source Sebacic (C) -0.2 -1.0 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.4 compare
soil soil EcoFAB sample 1; outgrowth in LB -0.2 -0.6 compare
carbon source Protocatechuic Acid (C) -0.2 -1.2 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.9 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 +1.1 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.7 compare
nitrogen source nitrogen source nitrite 0.5mM +0.2 +1.1 compare
root root sample 6; outgrowth in LB +0.3 +1.3 compare
root root sample 4; outgrowth in LB +0.3 +1.4 compare
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +1.9 compare
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.4 +1.6 compare