Fitness data for ABIE53_006034 in Paraburkholderia graminis OAS925

type III secretion protein D
SEED: Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
KEGG: type III secretion protein SctD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
stress RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM -1.5 -4.5 compare
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -2.8 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -1.9 compare
stress R2A with Chloride 200 mM -1.4 -2.7 compare
carbon source D-Lactate (C) -1.2 -3.0 compare
carbon source L-Rhamnose (C) -1.1 -3.2 compare
carbon source Beta-Lactose (C) -1.1 -3.3 compare
carbon source Laminarin 10 g/L (C) -1.1 -2.3 compare
carbon source Shikimic Acid 5 mM (C) -1.0 -2.1 compare
carbon source L-Proline (C) -0.9 -2.4 compare
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.9 -2.2 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -2.3 compare
carbon source D-Sorbitol (C) -0.8 -2.0 compare
stress R2A with Chloride 200 mM -0.8 -2.0 compare
soil extract Shikimic Acid 5 mM in soil extract -0.8 -2.5 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -1.9 compare
carbon source Shikimic Acid 5 mM (C) -0.7 -1.5 compare
stress R2A with Propan-1-ol 13 g/L +0.7 +2.2 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 +1.5 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 +2.0 compare