Fitness data for ABIE53_005024 in Paraburkholderia graminis OAS925

LysR family transcriptional activator of dmlA
SEED: Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -2.4 compare
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.7 -1.6 compare
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -2.3 compare
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.7 -2.5 compare
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -2.1 compare
carbon source Tween 20 (C) -0.6 -1.9 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -2.4 compare
nitrogen source histamine 2mM N source -0.6 -1.9 compare
plant outgrowth control Plant outgrowth control -0.6 -1.8 compare
carbon source L-Threonine (C) -0.6 -2.3 compare
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.5 -2.2 compare
plant outgrowth control Plant outgrowth control -0.5 -1.5 compare
biofilm biofilm; planktonic cells from 96 well plate assay in R2A -0.5 -2.5 compare
stress RCH2_defined_glucose_5mM with Pyruvic 5 mM -0.5 -2.8 compare
carbon source 2-Deoxy-D-Ribose (C) -0.5 -2.2 compare
stress M9 with Isopropyl alcohol 21 g/L -0.5 -1.8 compare
tn7 efficiency Outgrowth after Tn7 transformation +0.5 +2.7 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +1.3 compare
motility_chemotaxis Motility_chemotaxis, R2A; inner cut +0.6 +2.6 compare
soil extract Shikimic Acid 5 mM in soil extract +0.6 +2.4 compare