Fitness data for ABIE53_002060 in Paraburkholderia graminis OAS925

tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family)
SEED: 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -1.1 -6.4 compare
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -4.2 compare
stress R2A with PEG 6000 16 vol% -0.9 -5.1 compare
carbon source L-Histidine (C) -0.8 -4.3 compare
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -0.7 -3.7 compare
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.7 -3.3 compare
carbon source D-Galacturonic Acid (C) -0.7 -3.6 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -3.1 compare
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.6 -3.1 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -3.1 compare
nitrogen source histamine 5mM N source -0.6 -3.8 compare
carbon source D,L-Malic Acid (C) -0.6 -3.2 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -2.5 compare
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.6 -3.0 compare
stress R2A with PEG 6000 16 vol% -0.6 -2.9 compare
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.6 -2.3 compare
soil extract Indole-3-pyruvic 5 mM in soil extract -0.6 -2.7 compare
biofilm biofilm; planktonic cells from 96 well plate assay in R2A -0.6 -3.1 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +2.3 compare
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.6 +2.6 compare