Fitness data for ABIE53_002059 in Paraburkholderia graminis OAS925

putative RNA-binding protein with TRAM domain
SEED: 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -5.3 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 -2.9 compare
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -3.3 compare
soil extract Indole-3-pyruvic 5 mM in soil extract -0.9 -2.2 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -3.8 compare
carbon source succinate (C) -0.9 -3.1 compare
carbon source L-Threonine (C) -0.8 -3.0 compare
soil extract Lumichrome 5 mM in soil extract -0.8 -3.0 compare
lb_dap plate control LB_DAP agar plate, outgrowth in LB -0.7 -2.4 compare
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -2.5 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -3.3 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -2.5 compare
stress Growth in presence of limonene -0.7 -3.5 compare
stress R2A with Chloride 200 mM +0.8 +2.0 compare
stress control RCH2_defined_glucose_5mM with hydroxide 1 mM +0.8 +3.2 compare
carbon source Shikimic Acid 5 mM (C) +0.8 +3.2 compare
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +2.5 compare
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +2.3 compare
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +0.9 +3.4 compare
carbon source Shikimic Acid 5 mM (C) +0.9 +3.3 compare