Fitness data for ABIE53_001584 in Paraburkholderia graminis OAS925

branched-chain amino acid transport system substrate-binding protein
SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
KEGG: branched-chain amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source L-Phenylalanine (C) -1.4 -8.3 compare
carbon source L-Phenylalanine (C) -1.1 -6.6 compare
stress R2A with p-Coumaric 0.5 mM -0.7 -5.2 compare
stress RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM -0.7 -4.5 compare
carbon source 4-Hydroxybenzoic Acid (C) -0.6 -4.3 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.6 -3.3 compare
stress R2A with p-Coumaric 0.5 mM -0.6 -4.1 compare
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.6 -3.5 compare
carbon source 4-Hydroxybenzoic Acid (C) -0.5 -3.1 compare
carbon source m-Inositol (C) -0.5 -2.9 compare
mixed community Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia -0.5 -3.1 compare
plant outgrowth control Plant outgrowth control +0.5 +2.2 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +2.8 compare
r2a outgrowth control R2A outgrowth control +0.5 +3.0 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 +2.5 compare
plant outgrowth control Plant outgrowth control +0.5 +3.2 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +3.0 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +3.1 compare
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +3.3 compare
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +3.4 compare