Fitness data for BT4305 in Bacteroides thetaiotaomicron VPI-5482

putative alpha-amylase (NCBI ptt file)
SEED: Alpha-amylase (EC 3.2.1.1)
KEGG: alpha-amylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.8)


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group condition fitness t score  
carbon source L-Rhamnose (C) -4.9 -16.9 compare
carbon source L-Rhamnose (C) -4.6 -16.2 compare
mouse_coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -3.9 -15.7 compare
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 -3.4 -6.5 compare
stress BHIS with Nitrofurantoin 0.15 mM -3.3 -11.6 compare
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 -3.3 -7.1 compare
mouse_coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -3.3 -15.2 compare
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -3.3 -10.3 compare
stress BHIS with Nitrofurantoin 0.15 mM -3.2 -14.4 compare
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 -3.1 -9.1 compare
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -3.1 -12.9 compare
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -3.0 -14.4 compare
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 -2.9 -5.6 compare
nitrogen source D-Serine (N) -2.9 -12.4 compare
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 -2.9 -7.5 compare
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.9 -10.6 compare
mouse_post_colonization Post-colonization (Day 12) - Cage6;Mouse1 -2.8 -4.7 compare
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 -2.8 -9.5 compare
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +3.0 +13.6 compare
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +3.1 +13.3 compare