Fitness data for BT4070 in Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase ECF-type sigma factor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
phage DAC15 _cps3_0.1MOI -1.2 -3.6 compare
mouse_post_colonization Post-colonization (Day 3) - Cage3;Mouse3 -1.1 -3.2 compare
control NoPhage -1.1 -2.7 compare
stress BHIS with Rifampicin 0.000048828125 mM -1.1 -3.2 compare
carbon source Red Arabinan from sugar-beet -1.1 -2.4 compare
stress BHIS with Ceftazidime 0.5 mg/ml -1.1 -2.1 compare
carbon source Hyaluronic from Streptococcus equi -1.1 -2.5 compare
phage DAC23_cps8_10MOI -1.0 -2.2 compare
mouse Post-colonization (Day 2) - Cage1C;Mouse2 -1.0 -2.0 compare
nitrogen source Gly-DL-Asp (N) -1.0 -2.9 compare
phage HNL05_cps7_0.1MOI -0.9 -2.2 compare
stress Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% -0.9 -2.7 compare
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) -0.9 -2.4 compare
phage DAC19_cps8_0.1MOI -0.9 -2.5 compare
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.9 -2.7 compare
stress BHIS with Cephalothin 0.1 mM -0.9 -2.5 compare
stress BHIS with Lomefloxacin 0.025 mM -0.9 -2.3 compare
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 +0.9 +3.4 compare
stress BHIS with Vancomycin 0.016 mg/ml +0.9 +2.7 compare
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml +1.3 +1.8 compare