Fitness data for BT3396 in Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase ECF-type sigma factor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -2.1 -5.2 compare
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -1.7 -4.2 compare
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM -1.6 -4.0 compare
stress BHIS with Cefoxitin 0.025 mM -1.2 -3.6 compare
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 -1.2 -2.7 compare
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM -1.2 -4.7 compare
stress Varel_Bryant_medium_Glucose with Oxytetracycline 0.000390625 mM -1.2 -3.5 compare
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM -1.1 -3.7 compare
carbon source Heparin from porcine intestinal mucosa (C) -1.0 -3.2 compare
mouse_coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.0 -2.8 compare
carbon source Mannan from Saccharomyces cerevisiae (C) -1.0 -2.2 compare
stress BHIS with Doxycycline hyclate 0.0001953125 mM -1.0 -3.8 compare
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 -1.0 -2.7 compare
stress Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6 -1.0 -3.2 compare
mouse_post_colonization Post-colonization (Day 2) - Cage1;Mouse1 -0.9 -3.1 compare
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM -0.9 -2.8 compare
nitrogen source L-Glutamine (N) +0.9 +3.8 compare
stress BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM +1.1 +2.4 compare
nitrogen source L-aspartic (N) +1.9 +5.7 compare
nitrogen source L-Valine (N) +1.9 +7.2 compare