Fitness data for BT0139 in Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -1.8 -2.9 compare
stress BHIS with Trimethoprim 0.0125 mM -1.6 -2.9 compare
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 -1.5 -2.5 compare
mouse_coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.5 -3.0 compare
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -1.4 -2.7 compare
carbon source Heparin from porcine intestinal mucosa (C) -1.4 -2.6 compare
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 -1.4 -3.4 compare
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse4 -1.4 -3.6 compare
carbon source Heparin from porcine intestinal mucosa (C) -1.4 -2.4 compare
mouse_post_colonization Post-colonization (Day 3) - Cage7;Mouse1 -1.4 -3.2 compare
phage DAC16_cps7_10MOI -1.3 -2.1 compare
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 -1.3 -2.0 compare
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -1.3 -2.3 compare
mouse_post_colonization Post-colonization (Day 4) - Cage5;Mouse5 -1.3 -3.2 compare
stress BHIS with Doxycycline hyclate 0.0001953125 mM -1.3 -2.6 compare
phage DAC23_cps8_0.1MOI -1.3 -2.7 compare
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 -1.3 -2.8 compare
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse2 -1.3 -3.1 compare
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM -1.2 -3.4 compare
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +1.3 +2.8 compare