Fitness for 1 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS19110
carbon source	D,L-Lactate (C)	-5.1
carbon source	D,L-Lactate (C)	-4.6
carbon source	D,L-Lactate (C)	-4.6
carbon source	L-Rhamnose (C)	-4.4
carbon source	L-Rhamnose (C)	-4.3
carbon source	L-Fucose (C)	-3.9
carbon source	L-Fucose (C)	-3.7
carbon source	L-Rhamnose (C)	-3.5
carbon source	D-Lactate (C)	-3.3
carbon source	L-Lactate (C)	-3.2
carbon source	D-Lactate (C)	-3.0
carbon source	L-Lactate (C)	-3.0
carbon source	L-Rhamnose (C)	-3.0
carbon source	D,L-Lactate (C)	-2.3
carbon source	L-Fucose (C)	-0.6
carbon source	D-Sorbitol (C)	-0.4
carbon source	L-Fucose (C)	-0.4
carbon source	L-mannose (C)	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4
nutrient	L-Serine	+0.4
carbon source	D-Ribose (C)	+0.4
carbon source	Carbon source D-Glucose 20 mM	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.5
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.5
carbon source	D-Gluconic Acid (C)	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.8
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