Fitness for 1 genes in Herbaspirillum seropedicae SmR1

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Group Condition HSERO_RS07235
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.7
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.7
supernatant control Vogels_fungal_media 0.1X -0.6
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.6
plant Control soil assay; outgrowth in LB -0.5
carbon source D-Lactate (C) -0.5
carbon source D-Galacturonic Acid (C) -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5
carbon source D-Ribose (C) -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.5
carbon source Carbon source Phenylacetic 5 mM -0.4
carbon source D-Gluconic Acid (C) -0.4
carbon source m-Inositol (C) -0.4
stress nitrate 200 mM -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.4
micoeukaryotes C.elegans, mixed culture-1 -0.4
carbon source D-Glucose-6-Phosphate (C) -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4
carbon source Glycerol (C) -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.3
control NoPredeControl +0.4
nutrient Min media with glucose +0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.4
plant Control soil assay; outgrowth in LB +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5
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HSERO_RS07235