Fitness for 1 genes in Herbaspirillum seropedicae SmR1

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Group Condition HSERO_RS05110
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -3.3
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -3.0
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -2.7
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -2.6
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -2.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.6
carbon source m-Inositol (C) -1.3
carbon source D-Ribose (C) -1.3
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -1.2
stress Sisomicin 0.125 mg/ml -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0
carbon source D-Sorbitol (C) -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.9
carbon source D-Glucose (C) -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.8
supernatant control Vogels_fungal_media; pH 5.5 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7
stress Nickel (II) chloride 0.6 mM +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8
vitamin With vitamins t2 +0.8
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.8
carbon source L-Asparagine (C) +0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.9
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3
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HSERO_RS05110