Fitness for 1 genes in Herbaspirillum seropedicae SmR1

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Group Condition HSERO_RS04560
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5
carbon source m-Inositol (C) -0.4
carbon source D-Glucose (C) -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3
carbon source L-Arabinose (C) -0.3
carbon source D-Glucose (C) -0.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.3
agar plate interaction control Taped volatile agar plate with no fungus -0.3
carbon source D-Xylose (C) -0.3
carbon source D-Gluconic Acid (C) -0.3
carbon source L-Glutamine (C) -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3
carbon source a-Ketoglutaric (C) -0.3
carbon source D-Xylose (C) -0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.2
stress Lomefloxacin 0.012 mM +0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.3
supernatant control Vogels_fungal_media; pH 5.5 +0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.3
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days +0.3
control NoPredeControl +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4
plant Control soil assay; outgrowth in LB +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6
stress Cisplatin 0.003 mg/ml +1.3
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HSERO_RS04560