Fitness for 1 genes in Burkholderia phytofirmans PsJN

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Group Condition BPHYT_RS19050
carbon source adipate (C) -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.5
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.5
carbon source Phenylacetic 5 mM (C) -0.4
nitrogen source L-Serine (N) -0.4
carbon source Protocatechuic Acid (C) -0.4
carbon source succinate (C) -0.4
carbon source Protocatechuic Acid (C) -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3
phage P. phyto corn MOI 1 -0.3
phage 36hr PHYTO8 MOI 0.1 -0.3
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3
phage 24hr PHYTO7 MOI 1 +0.4
motility outer cut, LB soft agar motility assay +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4
supernatant control Vogels_fungal_media 0.1X +0.4
phage P. phyto PHYTO2 MOI 1 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7
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BPHYT_RS19050