Fitness for 1 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16880
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-5.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-4.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-4.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-4.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-4.1
carbon source	L-Asparagine (C)	-3.7
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-3.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-3.4
carbon source	Protocatechuic Acid (C)	-3.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-3.1
carbon source	succinate (C)	-2.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.7
nitrogen source	L-Asparagine (N)	-2.6
tn7 efficiency	Outgrowth after Tn7 transformation	-2.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.3
nitrogen source	L-Serine (N)	-2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-2.2
carbon source	succinate (C)	-2.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.9
r2a control	R2A control	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.9
carbon source	L-Glutamine (C)	-1.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.9
nitrogen source	L-Lysine (N)	+1.8
carbon source	Phenylacetic 5 mM (C)	+2.0
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+2.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+2.3
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