Fitness for 1 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS17030
nutrient dropout	CDM1 without Histidine	-6.1
nutrient dropout	CDM1 without Histidine	-5.8
nutrient dropout	CDM1 without Tryptophan	-5.6
nutrient dropout	CDM1 without Tryptophan	-5.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-5.2
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-4.3
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-3.9
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-3.8
chicken	chicken 2; day 5; diet=StandardDiet; sample=FecalPellet	-1.9
stress	Recovery broth with 5-Fluorouracil 0.2 mM	-1.9
supernatant	CDM1Gut with 50% spent media from Clostridium perfringens WAL-14572	-1.9
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	-1.7
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day3	-1.7
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day5	-1.6
mouse	diet=StandardDiet2; sample=FecalPellet; mouse18; day3	-1.6
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	-1.4
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day2	-1.4
supernatant	CDM1Gut with 50% spent media from Bifidobacterium adolescentis L2-32	-1.3
supernatant	CDM1Gut with 50% spent media from Clostridium perfringens WAL-14572	-1.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day5	-1.2
mouse	mouse 5; day 1; diet=StandardDiet; sample=FecalPellet	-1.2
stress	Recovery broth with Ciprofloxacin 0.1 mM	-1.2
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-1.1
mouse	mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet	-1.1
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	-1.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day2	-1.0
mouse	mouse 4; day 2; diet=StandardDiet; sample=FecalPellet	-1.0
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4	-1.0
stress	Recovery broth with Streptomycin 0.3 mM	+1.0
mouse	mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet	+1.2
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