Fitness for 1 genes in Bifidobacterium breve UCC2003

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Group Condition BBR_RS15475
nutrient dropout CDM1 without Histidine -6.5
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -5.6
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -5.2
nutrient dropout CDM1 without Histidine -4.9
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -1.1
mouse mouse 5; day 1; diet=StandardDiet; sample=FecalPellet -0.9
supernatant CDM1Gut with 50% spent media from Clostridium clostridioforme 2_1_49FAA -0.7
nutrient dropout CDM1 without Proline -0.7
stress Recovery broth with Nitrofurantoin 0.05 mM -0.6
nutrient dropout CDM1 without Adenine -0.6
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 +0.6
stress Recovery broth with Ticarcillin 4e-04 mM +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 +0.6
mouse coculture cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 +0.6
stress Recovery broth with Levofloxacin 0.2 mM +0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 +0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 +0.7
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 +0.7
stress Recovery broth with Gentamicin 0.4 mM +0.8
stress Recovery broth with Ciprofloxacin 0.1 mM +0.8
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 +1.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 +1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 +1.1
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BBR_RS15475