Fitness for 1 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS14475
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1	-4.8
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-4.8
chicken	chicken 2; day 5; diet=StandardDiet; sample=FecalPellet	-4.2
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	-4.0
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-4.0
mouse coculture	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-4.0
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	-3.8
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-3.8
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day4	-3.8
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-3.7
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	-3.7
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse15; day1	-3.5
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	-3.2
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5	-3.2
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-3.2
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	-3.2
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6	-3.2
stress	Recovery broth with Penicillin G 2e-04 mM	-3.1
mouse coculture	cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482	-3.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day3	-2.9
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5	-2.9
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6	-2.8
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5	-2.8
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2	-2.7
mouse	diet=StandardDiet; sample=FecalPellet; mouse2; day4	-2.7
carbon source	reconstituted MRS with Sucrose 29 mM	-2.7
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-2.6
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4	-2.6
stress	Recovery broth with Amoxicillin 0.003 mM	-2.6
chicken	chicken 10; day 5; diet=StandardDiet; sample=FecalPellet	-2.5
		remove BBR_RS14475