Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.887.1 and Xcc-8004.889.1 are separated by 396 nucleotidesXcc-8004.889.1 and Xcc-8004.890.1 are separated by 48 nucleotidesXcc-8004.890.1 and Xcc-8004.891.1 overlap by 7 nucleotidesXcc-8004.891.1 and Xcc-8004.892.1 overlap by 169 nucleotides Xcc-8004.887.1: Xcc-8004.887.1 - Rod shape-determining protein RodA, at 835,292 to 836,410 Xcc-8004.887.1 Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520 Xcc-8004.889.1 Xcc-8004.890.1: Xcc-8004.890.1 - Mobile element protein, at 837,569 to 837,832 Xcc-8004.890.1 Xcc-8004.891.1: Xcc-8004.891.1 - Mobile element protein, at 837,826 to 838,671 Xcc-8004.891.1 Xcc-8004.892.1: Xcc-8004.892.1 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 838,503 to 839,714 Xcc-8004.892.1
Group Condition Xcc-8004.887.1 Xcc-8004.889.1 Xcc-8004.890.1 Xcc-8004.891.1 Xcc-8004.892.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.4 N.D. N.D. -2.3
in planta xylem Xylemvessel barcodes T0L1P3 N.D. +0.3 N.D. N.D. -2.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.6 N.D. N.D. -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.5 N.D. N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.4 N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.1 N.D. N.D. -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.5 N.D. N.D. -0.5
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. -0.2 N.D. N.D. -0.8
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.1 N.D. N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.5 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.5 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.1 N.D. N.D. -0.7
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. +0.0 N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 N.D. N.D. -0.8
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.2 N.D. N.D. -0.6
carbon source D-Fructose 16.67 mM (C) N.D. -0.5 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.6 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.3 N.D. N.D. -0.8
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. +0.3 N.D. N.D. -0.8
in planta xylem Xylemvessel barcodes T1L3P4 N.D. +0.2 N.D. N.D. -0.7
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. +0.2 N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.5 N.D. N.D. +0.2
r2a control R2A control N.D. +0.5 N.D. N.D. -0.7
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. +0.4 N.D. N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.7 N.D. N.D. -0.3
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.6 N.D. N.D. +0.1
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +1.0 N.D. N.D. -0.0
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. +0.4 N.D. N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.3 N.D. N.D. +0.7
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.4 N.D. N.D. +0.8
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