Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.884.1 and Xcc-8004.885.1 are separated by 3 nucleotidesXcc-8004.885.1 and Xcc-8004.887.1 overlap by 4 nucleotidesXcc-8004.887.1 and Xcc-8004.889.1 are separated by 396 nucleotidesXcc-8004.889.1 and Xcc-8004.890.1 are separated by 48 nucleotides Xcc-8004.884.1: Xcc-8004.884.1 - Rod shape-determining protein MreD, at 832,746 to 833,231 Xcc-8004.884.1 Xcc-8004.885.1: Xcc-8004.885.1 - Penicillin-binding protein 2 (PBP-2), at 833,235 to 835,295 Xcc-8004.885.1 Xcc-8004.887.1: Xcc-8004.887.1 - Rod shape-determining protein RodA, at 835,292 to 836,410 Xcc-8004.887.1 Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520 Xcc-8004.889.1 Xcc-8004.890.1: Xcc-8004.890.1 - Mobile element protein, at 837,569 to 837,832 Xcc-8004.890.1
Group Condition Xcc-8004.884.1 Xcc-8004.885.1 Xcc-8004.887.1 Xcc-8004.889.1 Xcc-8004.890.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -3.7 N.D. N.D. -0.2 N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -3.7 N.D. N.D. -0.2 N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -3.7 N.D. N.D. +0.1 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -3.2 N.D. N.D. -0.2 N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -3.2 N.D. N.D. -0.2 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -3.3 N.D. N.D. +0.1 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -3.0 N.D. N.D. -0.0 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -2.8 N.D. N.D. -0.1 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -2.7 N.D. N.D. -0.1 N.D.
control PBS control -2.2 N.D. N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.4 N.D. N.D. -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 N.D. N.D. -0.4 N.D.
carbon source Citric Acid 16.67 mM (C) -1.1 N.D. N.D. -0.4 N.D.
control PBS control -1.7 N.D. N.D. +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. N.D. -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 N.D. N.D. +0.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -1.1 N.D. N.D. -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 N.D. N.D. -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. N.D. -0.2 N.D.
control PBS control -1.1 N.D. N.D. +0.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -1.1 N.D. N.D. +0.2 N.D.
r2a control R2A control -0.8 N.D. N.D. +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 N.D. N.D. +0.7 N.D.
carbon source D-Fructose 16.67 mM (C) +1.0 N.D. N.D. -0.5 N.D.
in planta xylem Xylemvessel barcodes T0L2P4 +1.0 N.D. N.D. -0.3 N.D.
carbon source Pectin from apple 2 g/L (C) +1.3 N.D. N.D. -0.1 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.7 N.D. N.D. +0.5 N.D.
in planta xylem Xylemvessel barcodes T0L1P3 +0.9 N.D. N.D. +0.3 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +0.3 N.D. N.D. +1.0 N.D.
carbon source Citric Acid 10mM (C) +1.3 N.D. N.D. +0.2 N.D.
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