Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.848.1 and Xcc-8004.849.1 are separated by 17 nucleotidesXcc-8004.849.1 and Xcc-8004.850.1 are separated by 246 nucleotidesXcc-8004.850.1 and Xcc-8004.852.1 are separated by 118 nucleotidesXcc-8004.852.1 and Xcc-8004.853.1 are separated by 257 nucleotides Xcc-8004.848.1: Xcc-8004.848.1 - Mobile element protein, at 799,480 to 800,334 Xcc-8004.848.1 Xcc-8004.849.1: Xcc-8004.849.1 - Mobile element protein, at 800,352 to 800,645 Xcc-8004.849.1 Xcc-8004.850.1: Xcc-8004.850.1 - ATP-dependent protease HslV (EC 3.4.25.-), at 800,892 to 801,671 Xcc-8004.850.1 Xcc-8004.852.1: Xcc-8004.852.1 - ATP-dependent hsl protease ATP-binding subunit HslU, at 801,790 to 803,157 Xcc-8004.852.1 Xcc-8004.853.1: Xcc-8004.853.1 - putative; ORF located using Glimmer/Genemark, at 803,415 to 803,714 Xcc-8004.853.1
Group Condition Xcc-8004.848.1 Xcc-8004.849.1 Xcc-8004.850.1 Xcc-8004.852.1 Xcc-8004.853.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.4 -1.2 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. -1.2 -0.0 N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. -0.7 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.6 -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.6 -0.5 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. N.D. -0.3 -0.7 N.D.
moka MOKA N.D. N.D. -0.2 -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.2 -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.2 -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.3 -0.5 N.D.
in planta xylem Xylemvessel barcodes T0L1P4 N.D. N.D. +0.2 -1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.2 -0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.2 -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. +0.3 -0.7 N.D.
in planta xylem Xylemvessel barcodes T0L2P4 N.D. N.D. -0.6 +0.3 N.D.
control PBS control N.D. N.D. -0.7 +0.4 N.D.
moka MOKA N.D. N.D. -0.5 +0.3 N.D.
control PBS control N.D. N.D. -0.6 +0.5 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. N.D. -0.6 +0.7 N.D.
control PBS control N.D. N.D. -0.4 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.3 +0.5 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. -0.4 +0.8 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. -0.2 +0.7 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. +0.1 +0.6 N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. +0.2 +0.7 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. +0.4 +0.7 N.D.
carbon source Citric Acid 16.67 mM (C) N.D. N.D. +0.0 +1.1 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. +0.7 +0.5 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. +0.5 +0.7 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. +0.6 +0.7 N.D.
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