Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.679.1 and Xcc-8004.680.1 are separated by 17 nucleotidesXcc-8004.680.1 and Xcc-8004.681.1 are separated by 79 nucleotidesXcc-8004.681.1 and Xcc-8004.682.1 are separated by 829 nucleotidesXcc-8004.682.1 and Xcc-8004.683.1 are separated by 5 nucleotides Xcc-8004.679.1: Xcc-8004.679.1 - 23Sr RNA gene, at 624,649 to 625,035 Xcc-8004.679.1 Xcc-8004.680.1: Xcc-8004.680.1 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 625,053 to 625,535 Xcc-8004.680.1 Xcc-8004.681.1: Xcc-8004.681.1 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 625,615 to 626,061 Xcc-8004.681.1 Xcc-8004.682.1: Xcc-8004.682.1 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 626,891 to 629,197 Xcc-8004.682.1 Xcc-8004.683.1: Xcc-8004.683.1 - hypothetical protein, at 629,203 to 629,535 Xcc-8004.683.1
Group Condition Xcc-8004.679.1 Xcc-8004.680.1 Xcc-8004.681.1 Xcc-8004.682.1 Xcc-8004.683.1
in planta xylem Xylemvessel barcodes T0L1P4 +0.4 N.D. N.D. N.D. -5.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.3 N.D. N.D. N.D. -2.4
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -1.3 N.D. N.D. N.D. -0.7
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -1.8 N.D. N.D. N.D. +0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.9 N.D. N.D. N.D. -0.6
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.0 N.D. N.D. N.D. -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. N.D. N.D. -0.6
r2a control R2A control -1.4 N.D. N.D. N.D. +0.2
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.3 N.D. N.D. N.D. -1.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.3 N.D. N.D. N.D. -1.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -1.1 N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 N.D. N.D. N.D. -1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 N.D. N.D. N.D. +0.2
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.9 N.D. N.D. N.D. +0.4
carbon source D-Fructose 16.67 mM (C) +0.7 N.D. N.D. N.D. -0.9
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.7 N.D. N.D. N.D. +0.5
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +0.6 N.D. N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 N.D. N.D. N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.2 N.D. N.D. N.D. -1.0
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.4 N.D. N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 N.D. N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 N.D. N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.3 N.D. N.D. N.D. +0.2
clovis xylem sap Clovis xylem sap +1.1 N.D. N.D. N.D. +0.5
carbon source Citric Acid 16.67 mM (C) +1.3 N.D. N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 N.D. N.D. N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 N.D. N.D. N.D. +1.1
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