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Protein
Homologs
Fitness for 5 genes in
Xanthomonas campestris pv. campestris strain 8004
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Xcc-8004.606.1 and Xcc-8004.607.1 are separated by 276 nucleotides
Xcc-8004.607.1 and Xcc-8004.608.1 are separated by 482 nucleotides
Xcc-8004.608.1 and Xcc-8004.609.1 overlap by 1 nucleotides
Xcc-8004.609.1 and Xcc-8004.610.1 are separated by 13 nucleotides
Xcc-8004.606.1: Xcc-8004.606.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 557,789 to 558,280
Xcc-8004.606.1
Xcc-8004.607.1: Xcc-8004.607.1 - hypothetical protein, at 558,557 to 559,582
Xcc-8004.607.1
Xcc-8004.608.1: Xcc-8004.608.1 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 560,065 to 561,540
Xcc-8004.608.1
Xcc-8004.609.1: Xcc-8004.609.1 - hypothetical protein, at 561,540 to 562,610
Xcc-8004.609.1
Xcc-8004.610.1: Xcc-8004.610.1 - putative; ORF located using Glimmer/Genemark, at 562,624 to 562,989
Xcc-8004.610.1
Group
Condition
Xcc-8004.606.1
Xcc-8004.607.1
Xcc-8004.608.1
Xcc-8004.609.1
Xcc-8004.610.1
in planta xylem
Xylemvessel barcodes Location 3 4 dpi (25 plantes)
+0.1
+0.3
-4.6
-0.5
+0.2
in planta xylem
Xylemvessel barcodes Location 3 4 dpi (25 plantes)
-0.0
+0.4
-4.1
-0.3
-0.4
in planta xylem
Xylemvessel barcodes Location 3 6 dpi (25 plantes)
-0.2
-0.3
-2.6
-1.2
-0.2
carbon source
Citric Acid 10mM (C)
+0.3
-0.5
-3.3
+0.4
-0.7
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
+0.0
-0.2
-3.2
-0.8
+0.7
carbon source
Pectin from apple 2 g/L (C)
-0.2
-0.3
-2.7
+0.2
-0.4
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
+0.1
+0.1
-3.6
+0.1
+0.0
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
-0.3
+0.2
-3.0
+1.1
-1.3
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
-0.1
-0.2
-2.7
-0.6
+0.3
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
+0.1
-0.1
-1.6
-0.6
-1.0
carbon source
D-Glucose 16.67 mM (C)
-0.0
-0.0
-2.9
-0.1
+0.0
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
+0.0
-0.2
-2.5
+0.0
-0.4
carbon source
Citric Acid 16.67 mM (C)
-0.2
+0.2
-2.6
-0.1
-0.3
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
+0.0
+0.5
-2.4
-0.2
-0.8
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
+0.1
+0.1
-1.7
-0.8
-0.4
carbon source
D-Fructose 16.67 mM (C)
-0.0
+0.1
-2.8
+0.1
-0.2
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
-0.0
+0.1
-2.9
-0.1
+0.1
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
+0.0
-0.1
-1.3
-1.9
+0.6
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
+0.1
+0.4
-3.5
-0.6
+0.9
in planta
1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
+0.3
-0.4
-2.9
+0.1
+0.3
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
+0.3
-0.2
-1.5
-0.2
-0.5
in planta
1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
-0.2
+0.0
-3.4
+0.7
+0.8
in planta
1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
+0.1
+0.2
-3.4
+0.4
+0.7
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
+0.5
+0.2
-2.4
-0.4
+0.1
in planta xylem
Xylemvessel barcodes T0L1P4
+0.1
-0.1
-0.4
-1.8
+0.3
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
+0.2
+0.2
-2.2
+0.2
-0.2
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
-0.1
+0.7
-1.3
+0.3
+0.3
in planta xylem
Xylemvessel barcodes Location 3 6 dpi (25 plantes)
+0.3
+0.5
-2.8
+1.4
+0.8
in planta
1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
+0.9
+0.7
-2.5
+0.3
+1.1
r2a control
R2A control
-0.2
+0.2
+1.0
-0.9
+0.6
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