Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3.1 and Xcc-8004.4.1 are separated by 886 nucleotidesXcc-8004.4.1 and Xcc-8004.6.1 are separated by 113 nucleotidesXcc-8004.6.1 and Xcc-8004.8.1 are separated by 67 nucleotidesXcc-8004.8.1 and Xcc-8004.9.1 are separated by 62 nucleotides Xcc-8004.3.1: Xcc-8004.3.1 - DNA polymerase III beta subunit (EC 2.7.7.7), at 1,646 to 2,746 Xcc-8004.3.1 Xcc-8004.4.1: Xcc-8004.4.1 - DNA recombination and repair protein RecF, at 3,633 to 4,739 Xcc-8004.4.1 Xcc-8004.6.1: Xcc-8004.6.1 - DNA gyrase subunit B (EC 5.99.1.3), at 4,853 to 7,297 Xcc-8004.6.1 Xcc-8004.8.1: Xcc-8004.8.1 - FIG01210301: hypothetical protein, at 7,365 to 8,201 Xcc-8004.8.1 Xcc-8004.9.1: Xcc-8004.9.1 - Zn-dependent protease with chaperone function, at 8,264 to 9,070 Xcc-8004.9.1
Group Condition Xcc-8004.3.1 Xcc-8004.4.1 Xcc-8004.6.1 Xcc-8004.8.1 Xcc-8004.9.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.3 N.D. -0.7 -0.8
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. -0.1 N.D. -0.7 -0.3
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.2 N.D. -0.4 -0.4
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.3 N.D. -0.2 -0.5
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.1 N.D. -0.2 -0.5
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.2 N.D. -0.3 -0.3
carbon source Citric Acid 10mM (C) N.D. -0.2 N.D. -0.4 -0.2
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. -0.1 N.D. -0.0 -0.6
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.1 N.D. -0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.3 N.D. -0.4 -0.1
in planta xylem Xylemvessel barcodes T0L1P4 N.D. -0.3 N.D. -0.3 -0.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.0 N.D. -0.3 -0.4
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.1 N.D. -0.4 -0.1
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.2 N.D. -0.2 -0.3
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. -0.2 N.D. +0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 N.D. -0.4 -0.2
in planta xylem Xylemvessel barcodes T0L2P4 N.D. -0.3 N.D. -0.3 +0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.1 N.D. +0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.2 N.D. -0.6 +0.3
carbon source D-Glucose 16.67 mM (C) N.D. -0.3 N.D. -0.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.1 N.D. -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.2 N.D. -0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.0 N.D. -0.4 -0.0
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. +0.1 N.D. -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 N.D. -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.1 N.D. -0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 N.D. -0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.0 N.D. -0.3 +0.3
control PBS control N.D. -0.1 N.D. +0.1 +0.3
carbon source Citric Acid 16.67 mM (C) N.D. -0.1 N.D. +0.0 +0.7
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