Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.5351.1 and Xcc-8004.5352.1 are separated by 168 nucleotidesXcc-8004.5352.1 and Xcc-8004.5353.1 overlap by 4 nucleotidesXcc-8004.5353.1 and Xcc-8004.5354.1 overlap by 4 nucleotidesXcc-8004.5354.1 and Xcc-8004.5356.1 are separated by 295 nucleotides Xcc-8004.5351.1: Xcc-8004.5351.1 - HigA protein (antitoxin to HigB), at 5,079,039 to 5,079,329 Xcc-8004.5351.1 Xcc-8004.5352.1: Xcc-8004.5352.1 - Exodeoxyribonuclease V alpha chain (EC 3.1.11.5), at 5,079,498 to 5,081,735 Xcc-8004.5352.1 Xcc-8004.5353.1: Xcc-8004.5353.1 - Exodeoxyribonuclease V beta chain (EC 3.1.11.5), at 5,081,732 to 5,085,850 Xcc-8004.5353.1 Xcc-8004.5354.1: Xcc-8004.5354.1 - Exodeoxyribonuclease V gamma chain (EC 3.1.11.5), at 5,085,847 to 5,089,251 Xcc-8004.5354.1 Xcc-8004.5356.1: Xcc-8004.5356.1 - Fibronectin type III domain protein, at 5,089,547 to 5,094,775 Xcc-8004.5356.1
Group Condition Xcc-8004.5351.1 Xcc-8004.5352.1 Xcc-8004.5353.1 Xcc-8004.5354.1 Xcc-8004.5356.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.1 -2.9 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -1.1 -1.1 N.D. N.D. -0.0
carbon source Citric Acid 16.67 mM (C) -0.3 -1.8 N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.4 -1.7 N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -1.5 -0.4 N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -0.8 N.D. N.D. +0.0
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.8 -0.8 N.D. N.D. -0.0
clovis xylem sap Clovis xylem sap +0.1 -1.6 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -1.3 N.D. N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -0.5 N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.3 -1.5 N.D. N.D. +0.0
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.4 -1.4 N.D. N.D. -0.1
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.0 -1.1 N.D. N.D. +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -1.0 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes T0L1P4 +0.5 -1.4 N.D. N.D. +0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.2 -1.1 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes T0L2P4 +0.2 -0.9 N.D. N.D. +0.0
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.1 -1.0 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 +0.3 N.D. N.D. -0.0
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.8 -1.6 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.8 -1.5 N.D. N.D. +0.0
in planta xylem Xylemvessel barcodes T1L3P4 +0.6 -1.4 N.D. N.D. +0.1
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.5 -1.2 N.D. N.D. +0.1
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino +0.2 -0.9 N.D. N.D. +0.0
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.4 -0.9 N.D. N.D. +0.1
moka MOKA +0.6 -0.9 N.D. N.D. +0.0
moka MOKA +0.8 -0.8 N.D. N.D. -0.0
clovis xylem sap Clovis xylem sap +1.0 -0.6 N.D. N.D. +0.0
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.7 -0.3 N.D. N.D. +0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +1.0 +0.3 N.D. N.D. -0.0
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