Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.5266.1 and Xcc-8004.5268.1 are separated by 537 nucleotidesXcc-8004.5268.1 and Xcc-8004.5269.1 overlap by 26 nucleotidesXcc-8004.5269.1 and Xcc-8004.5270.1 are separated by 17 nucleotidesXcc-8004.5270.1 and Xcc-8004.5272.1 overlap by 45 nucleotides Xcc-8004.5266.1: Xcc-8004.5266.1 - ATP-dependent DNA helicase Rep, at 5,006,540 to 5,008,516 Xcc-8004.5266.1 Xcc-8004.5268.1: Xcc-8004.5268.1 - Mobile element protein, at 5,009,054 to 5,009,152 Xcc-8004.5268.1 Xcc-8004.5269.1: Xcc-8004.5269.1 - Mobile element protein, at 5,009,127 to 5,009,399 Xcc-8004.5269.1 Xcc-8004.5270.1: Xcc-8004.5270.1 - Mobile element protein, at 5,009,417 to 5,010,271 Xcc-8004.5270.1 Xcc-8004.5272.1: Xcc-8004.5272.1 - XmnI methyltransferase, at 5,010,227 to 5,012,299 Xcc-8004.5272.1
Group Condition Xcc-8004.5266.1 Xcc-8004.5268.1 Xcc-8004.5269.1 Xcc-8004.5270.1 Xcc-8004.5272.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -2.0 N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. -1.7 N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -1.8 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.4 N.D. N.D. +0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -1.2 N.D. N.D. -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -1.1 N.D. N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.0 N.D. N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.9 N.D. N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -0.9 N.D. N.D. +0.0
carbon source Citric Acid 10mM (C) N.D. -0.9 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.8 N.D. N.D. +0.0
control PBS control N.D. -0.8 N.D. N.D. -0.0
clovis xylem sap Clovis xylem sap N.D. -0.7 N.D. N.D. -0.0
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.7 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.6 N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.7 N.D. N.D. +0.0
clovis xylem sap Clovis xylem sap N.D. -0.6 N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.5 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.7 N.D. N.D. +0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. -0.6 N.D. N.D. +0.1
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. -0.6 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes T0L1P3 N.D. -0.5 N.D. N.D. +0.1
carbon source Citric Acid 16.67 mM (C) N.D. -0.4 N.D. N.D. +0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. +0.5 N.D. N.D. -0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. +0.3 N.D. N.D. +0.2
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. +0.9 N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes T0L2P4 N.D. +1.0 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.1 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.2 N.D. N.D. +0.0
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +1.2 N.D. N.D. +0.1
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