Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.522.1 and Xcc-8004.523.1 are separated by 100 nucleotidesXcc-8004.523.1 and Xcc-8004.525.1 are separated by 158 nucleotidesXcc-8004.525.1 and Xcc-8004.526.1 overlap by 4 nucleotidesXcc-8004.526.1 and Xcc-8004.527.1 are separated by 407 nucleotides Xcc-8004.522.1: Xcc-8004.522.1 - Mobile element protein, at 475,704 to 477,200 Xcc-8004.522.1 Xcc-8004.523.1: Xcc-8004.523.1 - Cysteine desulfurase (EC 2.8.1.7), at 477,301 to 478,596 Xcc-8004.523.1 Xcc-8004.525.1: Xcc-8004.525.1 - Mobile element protein, at 478,755 to 479,018 Xcc-8004.525.1 Xcc-8004.526.1: Xcc-8004.526.1 - Mobile element protein, at 479,015 to 479,857 Xcc-8004.526.1 Xcc-8004.527.1: Xcc-8004.527.1 - ribosomal subunit interface protein, putative, at 480,265 to 480,606 Xcc-8004.527.1
Group Condition Xcc-8004.522.1 Xcc-8004.523.1 Xcc-8004.525.1 Xcc-8004.526.1 Xcc-8004.527.1
in planta xylem Xylemvessel barcodes T0L1P3 N.D. -0.6 N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. -0.5 N.D. N.D. N.D.
clovis xylem sap Clovis xylem sap N.D. -0.4 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.3 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.3 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes T0L2P4 N.D. +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 N.D. N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. +0.2 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.2 N.D. N.D. N.D.
control PBS control N.D. +0.3 N.D. N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.3 N.D. N.D. N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.4 N.D. N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. +0.4 N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.5 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. +0.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.6 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. +0.8 N.D. N.D. N.D.
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