Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.5105.1 and Xcc-8004.5106.1 are separated by 77 nucleotidesXcc-8004.5106.1 and Xcc-8004.5107.1 are separated by 268 nucleotidesXcc-8004.5107.1 and Xcc-8004.5108.1 overlap by 52 nucleotidesXcc-8004.5108.1 and Xcc-8004.5110.1 are separated by 403 nucleotides Xcc-8004.5105.1: Xcc-8004.5105.1 - DNA polymerase I (EC 2.7.7.7), at 4,840,113 to 4,842,896 Xcc-8004.5105.1 Xcc-8004.5106.1: Xcc-8004.5106.1 - FIG01210192: hypothetical protein, at 4,842,974 to 4,843,255 Xcc-8004.5106.1 Xcc-8004.5107.1: Xcc-8004.5107.1 - Uncharacterized protein ImpA, at 4,843,524 to 4,843,643 Xcc-8004.5107.1 Xcc-8004.5108.1: Xcc-8004.5108.1 - Uncharacterized protein ImpA, at 4,843,592 to 4,844,344 Xcc-8004.5108.1 Xcc-8004.5110.1: Xcc-8004.5110.1 - hypothetical protein, at 4,844,748 to 4,845,194 Xcc-8004.5110.1
Group Condition Xcc-8004.5105.1 Xcc-8004.5106.1 Xcc-8004.5107.1 Xcc-8004.5108.1 Xcc-8004.5110.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. -1.0 N.D. -0.4 -0.6
in planta xylem Xylemvessel barcodes T0L2P4 N.D. +0.1 N.D. -0.8 -1.0
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.4 N.D. -0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 N.D. -0.7 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 N.D. -0.3 -0.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.3 N.D. -0.4 -0.2
in planta xylem Xylemvessel barcodes T0L1P4 N.D. -0.1 N.D. -0.2 -0.6
in planta xylem Xylemvessel barcodes T1L3P4 N.D. -0.7 N.D. -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.4 N.D. -0.5 -0.6
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. -0.4 N.D. -0.4 +0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -0.3 N.D. +0.1 -0.4
carbon source Citric Acid 10mM (C) N.D. +0.3 N.D. -0.4 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.4 N.D. -0.9 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 N.D. -0.3 -0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.3 N.D. -0.2 -0.5
moka MOKA N.D. +0.2 N.D. -0.4 -0.2
clovis xylem sap Clovis xylem sap N.D. +0.3 N.D. -0.3 -0.4
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -0.4 N.D. +0.3 -0.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.5 N.D. +0.7 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 N.D. -0.5 +0.4
carbon source Citric Acid 16.67 mM (C) N.D. +0.5 N.D. -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.6 N.D. -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.4 N.D. -0.5 +0.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.2 N.D. -0.2 +1.0
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.3 N.D. +0.3 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 N.D. +0.5 -0.4
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.1 N.D. +0.6 +0.3
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. +0.3 N.D. +0.2 +0.3
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.3 N.D. +0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 N.D. +0.4 +0.5
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