Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.5099.1 and Xcc-8004.5100.1 overlap by 4 nucleotidesXcc-8004.5100.1 and Xcc-8004.5101.1 are separated by 301 nucleotidesXcc-8004.5101.1 and Xcc-8004.5105.1 are separated by 550 nucleotidesXcc-8004.5105.1 and Xcc-8004.5106.1 are separated by 77 nucleotides Xcc-8004.5099.1: Xcc-8004.5099.1 - FIG01209960: hypothetical protein, at 4,836,878 to 4,837,795 Xcc-8004.5099.1 Xcc-8004.5100.1: Xcc-8004.5100.1 - FIG01211066: hypothetical protein, at 4,837,792 to 4,838,361 Xcc-8004.5100.1 Xcc-8004.5101.1: Xcc-8004.5101.1 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 4,838,663 to 4,839,562 Xcc-8004.5101.1 Xcc-8004.5105.1: Xcc-8004.5105.1 - DNA polymerase I (EC 2.7.7.7), at 4,840,113 to 4,842,896 Xcc-8004.5105.1 Xcc-8004.5106.1: Xcc-8004.5106.1 - FIG01210192: hypothetical protein, at 4,842,974 to 4,843,255 Xcc-8004.5106.1
Group Condition Xcc-8004.5099.1 Xcc-8004.5100.1 Xcc-8004.5101.1 Xcc-8004.5105.1 Xcc-8004.5106.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.1 -1.7 N.D. N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -1.8 N.D. N.D. +0.4
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.3 -1.3 N.D. N.D. +0.3
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.1 -0.7 N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.0 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -1.1 N.D. N.D. +0.1
carbon source Citric Acid 10mM (C) -0.2 -1.0 N.D. N.D. +0.3
in planta xylem Xylemvessel barcodes T0L1P4 -0.4 -0.3 N.D. N.D. -0.1
r2a control R2A control +0.1 -0.7 N.D. N.D. -0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x +0.2 -0.5 N.D. N.D. -0.4
in planta xylem Xylemvessel barcodes T1L3P4 -0.2 +0.2 N.D. N.D. -0.7
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.3 -0.5 N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.7 N.D. N.D. +0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.3 -0.3 N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.6 N.D. N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -0.7 N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.5 N.D. N.D. +0.4
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x +0.1 +0.5 N.D. N.D. -0.3
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.0 +0.5 N.D. N.D. -0.3
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +0.1 +0.5 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.2 N.D. N.D. +0.5
clovis xylem sap Clovis xylem sap -0.3 +0.5 N.D. N.D. +0.3
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.1 +0.7 N.D. N.D. +0.1
carbon source D-Fructose 16.67 mM (C) -0.2 +0.8 N.D. N.D. +0.1
carbon source Citric Acid 16.67 mM (C) -0.4 +0.7 N.D. N.D. +0.5
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.1 +0.8 N.D. N.D. +0.1
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.1 +0.6 N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.1 N.D. N.D. -0.1
carbon source D-Glucose 16.67 mM (C) +0.2 +0.8 N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +1.3 N.D. N.D. +0.3
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